PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g039470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 350aa    MW: 38812.1 Da    PI: 6.9243
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g039470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.71.8e-691222882154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsa 85 
                     r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakr+er +ql ++++++++s++++++kr re            +    sa
  Csa16g039470.1 122 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRQERLAQLDSLQHHSTSSRETQNTKRLREAsggdnsdgkdhSGGGGSA 216
                     7899*************************************************************999999998888888888877766777899 PP

          DUF702  86 lsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                     l++t++++a+s++ le+s+ lP+ev+s+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  Csa16g039470.1 217 LATTRVVNANSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 288
                     **************998876*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.3E-63125287IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.3E-28127169IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-26236286IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNNNNNNN NNKQDHHQVD KDHHHQDKSN YLYLYKDEIY NNNKGFEIWP  60
PQYFQQQEQP QQQQQHASAP ANFYSFGMVP SGSSSNNNNN RSRSLYFNVV SDHEPGGFTV  120
TRQGGMNCQD CGNQAKKDCP HMRCRTCCKS RGFHCQTHVK STWVPAAKRQ ERLAQLDSLQ  180
HHSTSSRETQ NTKRLREASG GDNSDGKDHS GGGGSALATT RVVNANSNSG LEVSQHLPPE  240
VNSPAVFRCV RVSSIEEDED DQEYAYQTAV NIGGHVFKGI LYDQGPDQDH HHHLNLLAST  300
ATTTNVEETA TKAVAGNNNN GLMLDPSSLY PAQLNSFIAG TPFFTPPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8006200.0AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247300.0AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471665.10.0PREDICTED: protein SHI RELATED SEQUENCE 5
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLD7KSQ40.0D7KSQ4_ARALL; Putative uncharacterized protein
STRINGAT1G75520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-162SHI-related sequence 5